rs30611336 SNP Detail

Summary

• ID
  rs30611336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135709255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCT GGCACAGCCC CATGAAGGGC
  Y
  GACACCACTG GCTTATTGGT GACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45945851	mCV23370839	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss133816892	ENSMUSSNP3399652	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		T
ss321989802	CHEV_6_135682275	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30611336					SNP	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135709255 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18096	CpG island 18096	101 bp proximal
Gm14329	predicted gene 14329	613 bp upstream
Grin2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	within coordinates
Tssr63774	transcription start site region 63774	990 bp upstream
Tssr63775	transcription start site region 63775	505 bp downstream
Tssr63776	transcription start site region 63776	1330 bp downstream
Tssr63777	transcription start site region 63777	1350 bp downstream
Tssr63778	transcription start site region 63778	1408 bp downstream