rs30612334 SNP Detail

Summary

• ID
  rs30612334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48721913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTG TTCTCCCTCT TTGCCTTTGC
  Y
  TTGAGATGTA CATCTTTAAA AAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45948185	mCV25192972	ABI	CRAMUS_MOUSE	f	SNP		C	C			C	T
ss51661590	NES14829107	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C		T	C		T	C	C	C
ss133166437	ENSMUSSNP7216655	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				T
ss321794600	CHEV_6_48694978	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30612334					SNP	C	C	C	T	C	C	T	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51661590	NES14829107	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48721913 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17377	CpG island 17377	1690 bp distal
Gimap1	GTPase, IMAP family member 1	1184 bp downstream
Gimap5	GTPase, IMAP family member 5	1218 bp upstream
Gm28053	predicted gene, 28053	within coordinates
Rr135565	regulatory region 135565	1688 bp proximal
Rr146256	regulatory region 146256	1312 bp distal
Rr146257	regulatory region 146257	687 bp proximal
Rr368069	regulatory region 368069	1027 bp upstream
Rr399641	regulatory region 399641	1516 bp upstream
Tssr56207	transcription start site region 56207	1190 bp upstream
Tssr56208	transcription start site region 56208	1209 bp upstream
Tssr56209	transcription start site region 56209	1244 bp upstream
Tssr56210	transcription start site region 56210	1258 bp upstream
Tssr56211	transcription start site region 56211	1728 bp upstream
Tssr60779	transcription start site region 60779	1115 bp downstream