rs30612386 SNP Detail

Summary

• ID
  rs30612386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:154277244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTA GAATGGCCAT TTGGAATGGA
  Y
  AGCGGTGCAT TCTTTAGATT GGATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45448344	mCV24022711	ABI	CRAMUS_MOUSE	f	SNP		T	C
ss47479151	NES10333279	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	C	C	C	C	C	T
ss136116973	ENSMUSSNP610752	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30612386					SNP	T	T	C	T	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47479151	NES10333279	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154277244 () rs orientation: forward

Symbol	Name	Function Class
Rr587866	regulatory region 587866	1120 bp distal
Rr587867	regulatory region 587867	92 bp distal
Rr587868	regulatory region 587868	659 bp proximal
Rr587869	regulatory region 587869	900 bp proximal
Rr587870	regulatory region 587870	1068 bp proximal