rs30612651 SNP Detail

Summary

• ID
  rs30612651
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115221730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGA CAAGGCAGAG TTAATCCTAT
  K
  ACTCCTCTGT GTCCACCCCC AGAAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45945077	mCV24673866	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	G
ss133572410	ENSMUSSNP988380	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		G
ss321915628	CHEV_6_115194787	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30612651					SNP	G	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115221730 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D6Mit366	DNA segment, Chr 6, Massachusetts Institute of Technology 366			1792 bp distal
Syn2	synapsin II			Intron
				Noncoding-Transcript-Variant
Timp4	tissue inhibitor of metalloproteinase 4			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr58296	transcription start site region 58296			581 bp downstream