rs30612989 SNP Detail

Summary

• ID
  rs30612989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113284165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAC GCCGTCGCCG TCGCTGCTGC
  Y
  GCCGCCGCTG CCACAGCCTT TGCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45946464	mCV22332073	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss133564253	ENSMUSSNP2565006	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30612989					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113284165 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	within coordinates
Cpgi17838	CpG island 17838	within coordinates
Cpne9	copine family member IX	1633 bp downstream
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	530 bp upstream
Gm67816	predicted gene, 67816	within coordinates
Rr399829	regulatory region 399829	531 bp downstream
Rr636483	regulatory region 636483	1558 bp distal
Rr636484	regulatory region 636484	within coordinates
Rr636485	regulatory region 636485	236 bp proximal
Rr636486	regulatory region 636486	691 bp proximal
Rr636487	regulatory region 636487	1121 bp proximal
Tssr58189	transcription start site region 58189	227 bp downstream
Tssr58190	transcription start site region 58190	within coordinates
Tssr58191	transcription start site region 58191	35 bp upstream
Tssr58192	transcription start site region 58192	637 bp upstream
Tssr58193	transcription start site region 58193	663 bp upstream
Tssr62434	transcription start site region 62434	563 bp downstream