rs30614601 SNP Detail

Summary

• ID
  rs30614601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153564312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTTTCTG CACCTTTATA
  GGGCACCATC ATGTACAGCT AACGTGATAA CGGACCTCAA GCAGCTTTGT ACACTCAGTG
  CACACGGCCT GCTATATGCA CTTGACTGTG GTAGTTAAGG GAAGGTCTGT AAGAGGGAGG
  GATGCACAGT TCTCAGAGAA GGCACGCTCA CTGCCAGCAC AGACCAGGAA TGCTTACAGA
  Y
  GACAGAGAAT CTAGAGCCAG TCTTGACTGA TAGAAGTGCC CAAAGTGGAG GGTTCTGGGT
  AGACAAAGAG CTAAAGTAGA GACCTGGAAC ACAATCAGGG AGATGACACG CGACAGAGAT
  GCAAATTATG TGAAACTGAC GTAGGGTCAG GGTGGCGTAA GCAAAGGAAA GGAGGCTCTA
  AAGCAAAACT GGGCAGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47465722	NES10335937	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30614601					SNP	C	T	T	T	C	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47465722	NES10335937	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153564312 () rs orientation: forward

Symbol	Name	Function Class
Msh4	mutS homolog 4	within coordinates