rs30615078 SNP Detail

Summary

• ID
  rs30615078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30172101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTC AGCAACTGTC ACCATCAACC
  Y
  CTACACATCG AATCTAGAGT CTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45946583	mCV24692140	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss133095159	ENSMUSSNP2072317	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
ss321776216	CHEV_6_30122102	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30615078					SNP	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30172101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17248	CpG island 17248	814 bp proximal
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Rncr4	retina expressed non-coding RNA 4	791 bp upstream
Rr146072	regulatory region 146072	1700 bp distal
Rr146073	regulatory region 146073	100 bp distal
Rr146074	regulatory region 146074	99 bp proximal
Tssr55327	transcription start site region 55327	758 bp upstream
Tssr60107	transcription start site region 60107	1974 bp downstream
Tssr60108	transcription start site region 60108	1998 bp downstream