rs30615311 SNP Detail

Summary

• ID
  rs30615311
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191822927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGCCCCGGG GTAGGAGCTG GGTCCTCCGG TTGGAGGCAG
  GATCGGTTCA CTCCGGAATG AGACCGGCCC TAAAGACCTG GCGAGGCAGC TCCTCTCTGC
  W
  GTGAGGTCCG AGAGGGACTG AAAGGGCAGT ATTTCCACTT GGCTCTTTCC CTTTTGCTGT
  CTAAGAAGCG AATGCCACGA GTGGGGAAAT AAATAACCG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44946368	mCV23926455	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss146513873	ENSMUSSNP6462335	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
ss320197037	CHEV_1_193962512	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30615311					SNP	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191822927 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1232	CpG island 1232	within coordinates
Gm10516	predicted gene 10516	within coordinates
Gm37055	predicted gene, 37055	1806 bp downstream
Rcor3	REST corepressor 3	568 bp upstream
Rr29207	regulatory region 29207	within coordinates
Tssr15823	transcription start site region 15823	1000 bp upstream
Tssr15824	transcription start site region 15824	697 bp upstream
Tssr15825	transcription start site region 15825	663 bp upstream
Tssr15826	transcription start site region 15826	583 bp upstream