rs30615741 SNP Detail

Summary

• ID
  rs30615741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117161566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA GAAGATGTGC TGAACAATTC
  Y
  GACAGTAACG AAGGTGCCTA GGATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39203780	mCV25043678	ABI	CRAMUS_MOUSE	f	SNP	T	T				C	T
ss62578174	NES17296259	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T		T	T		T	T	T		C
ss146924578	ENSMUSSNP5161233	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss324842590	CHEV_14_117323376	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30615741					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62578174	NES17296259	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117161566 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6842	CpG island 6842	1015 bp proximal
Gpc6	glypican 6	1161 bp upstream
Rr497535	regulatory region 497535	786 bp proximal
Rr497536	regulatory region 497536	1793 bp proximal
Rr497537	regulatory region 497537	1984 bp proximal
Tssr127141	transcription start site region 127141	1051 bp upstream
Tssr127142	transcription start site region 127142	1105 bp upstream
Tssr127143	transcription start site region 127143	1137 bp upstream
Tssr127144	transcription start site region 127144	1225 bp upstream
Tssr127145	transcription start site region 127145	1351 bp upstream
Tssr127146	transcription start site region 127146	1362 bp upstream
Tssr127147	transcription start site region 127147	1391 bp upstream
Tssr127148	transcription start site region 127148	1404 bp upstream
Tssr127149	transcription start site region 127149	1618 bp upstream
Tssr127150	transcription start site region 127150	1649 bp upstream