rs30616291 SNP Detail

Summary

• ID
  rs30616291
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153513881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACTCAGG ATGGCTGCAT
  CTCCTTCCCA TGCTCTCTCG ATACTCTGGA AGTGGCAGCT GGAGGCAGAT TTTAGGATGT
  TTGGCTCACA GAAAGTGTCA TCTTCTTAGC CAAAGGACAC AAAGGCAGAA GACCAGAAAG
  CAGGCAGGTG AGACAGTTCT GAGTGAGGAA CAGCCCCTGT TCGGAACAGA GCTGCTCTGA
  R
  CCACTGAGGA AGCTTGGTTC TTTTGTGAAT GTGTGATCTC CAGGCCTCGT CTAAACCCAA
  CTGATCCCAG TAAGAGTCAG GGTTGCAGAG TTGTGCCCAC CCGCTGCATT GTCCCCCGAA
  ACATTAGCTA TCTGAGTTTG TTTGAAGGCC AACAACCTCA TCTAACCACA GCAGTGCACA
  CTCTCCGTAC TGCAGCACGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45512868	mCV24023696	ABI	CRAMUS_MOUSE	f	SNP		A	G				G		G
ss47466262	NES10336195	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		A	G	G	G	G	G	G	A
ss136113474	ENSMUSSNP937728	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30616291					SNP	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47466262	NES10336195	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153513881 () rs orientation: forward

Symbol	Name	Function Class
Rr587763	regulatory region 587763	917 bp distal
Rr587764	regulatory region 587764	1675 bp distal
Rr587765	regulatory region 587765	within coordinates