rs30616320 SNP Detail

Summary

• ID
  rs30616320
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5537561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGA AATTGAGAAT GCTCTTGAAC
  K
  CCTGAGTCTT CTACCCCCAC CTCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44946946	mCV24811225	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	T
ss146012146	ENSMUSSNP479992	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss325717054	CHEV_19_5487533	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30616320					SNP	G	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5537561 () rs orientation: forward

Symbol	Name	Function Class
1700061A03Rik	RIKEN cDNA 1700061A03 gene	1211 bp downstream
Cpgi10453	CpG island 10453	131 bp proximal
Cpgi10454	CpG island 10454	1381 bp proximal
Gm59148	predicted gene, 59148	1653 bp upstream
Mus81	MUS81 structure-specific endonuclease subunit	within coordinates
Rr363568	regulatory region 363568	within coordinates
Rr370432	regulatory region 370432	715 bp upstream
Rr405805	regulatory region 405805	1466 bp upstream
Tssr154437	transcription start site region 154437	1785 bp upstream
Tssr157605	transcription start site region 157605	738 bp downstream
Tssr157606	transcription start site region 157606	1408 bp downstream
Tssr157607	transcription start site region 157607	1427 bp downstream
Tssr157608	transcription start site region 157608	1513 bp downstream
Tssr157609	transcription start site region 157609	1544 bp downstream