rs30616387 SNP Detail

Summary

• ID
  rs30616387
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36351356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTCACACG TCACACCAGA GGACAGTCTA
  GATGTGCTAC AGGAAAACTT CAATCCCCAT TATCATGATG GTTTTTGTGG ATAGAAAAGT
  CCTGTGCGGA TGATACTGTG GAAAGCAGAG ACTGTCTTTT GGAGACACCA GCCCTCTTCT
  M
  TGCTCACAAG TAGGACGACG TAGGACTGGC CGGGAAGGGA TCTTACAGAG GCTCTGAGGT
  CCACGAGGGC TTGGTTCATA GCAGCAGCAG TGAAATAGAG AAGGTGCCTT TCTCCTGCCT
  TACAGGTGGG GTGATCCTGA GAGATGGGGG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44947495	mCV27594850	ABI	CRAMUS_MOUSE	f	SNP		A	C					A	A
ss51238004	NES14282093	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	A	A	C		A	A	A		C	A	C	C		C
ss148924940	ENSMUSSNP1387586	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						A
ss319688345	CHEV_1_36369120	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30616387					SNP	A	A	C	A	A	A	C	A	A	A	A	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51238004	NES14282093	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36351356 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Gm70518	predicted gene, 70518	within coordinates
Rr409286	regulatory region 409286	1468 bp distal