rs30616656 SNP Detail

Summary

• ID
  rs30616656
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153536791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACAGTGT ACTTACATAT
  AATGATAAAA TAAATAAAAT TTAAAAAAAA AAAAAAAAAA AAGAATACAC AGTGTAGAGT
  TGAGGGGAAG AGAAGATTTG AGCCCTAGAG AAGGATGGAC GAGAGACGAC AAATGTCAGT
  CAGCTACCCA TCAGACAAGT GAGACAGTTA CTGTGACAGA TGCCTGGGAT GGAGCAACTT
  W
  AAAAGCCGAG CTGTTCCTGC TCTTGCAGGT GTGGCTGCTG TGTCACATGG ATGTCAGTAG
  GTGGCAGAGG GGAGAGAGGC TATGTCTATG CTGAGTGTTC TGACCTTCAG ACATCTGAAG
  GATTAGTAGC CTAACATTTC CTGAAAAAAA GTGAGCCTGA GACCACCACC AGTCTGTCAC
  CACAGGGCCT GGACAGGGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47466007	NES10336110	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	T	A	A	A	A	A	A	A	A	A
ss136113957	ENSMUSSNP5053314	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30616656					SNP	T	A	A	A	T	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47466007	NES10336110	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153536791 () rs orientation: forward

Symbol	Name	Function Class
Gm25757	predicted gene, 25757	16 bp upstream
Rr587767	regulatory region 587767	544 bp distal
Rr587768	regulatory region 587768	401 bp distal
Rr587769	regulatory region 587769	210 bp distal
Rr587770	regulatory region 587770	within coordinates
Rr587771	regulatory region 587771	50 bp proximal
Rr587772	regulatory region 587772	656 bp proximal