rs30616673 SNP Detail

Summary

• ID
  rs30616673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129405475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTAGAAA GAGGGGAAAG
  TGAATAGCAG AATAAAAAAA TGACTAACAA TGGTATCCTC ACAGGGAAAA CATGACCCGC
  CAAAGTTCTA GCTAAGCAAT TGTGGAGTGT CCCTGCTAGA AGTTGGCTCA GGCTTCCTCT
  GGGGCTGTTG TGGTCAGCTT TTTGATAGAA TTACTGTACA TTTCATTTTG ACTCCCGTGA
  Y
  GTACACAGCT GCTGCACCCT AATGAGAGTC CCGAGTTGTG TTGGCTTTGG ATTAGGAAAT
  TCTAGACACA GCTCGCCTGG CTCCTTTGAC AGGAAATGCT GTGAGAGGCT GGTGATTTTC
  TGACCGATAA TGGTTGGGAT CACCTTAGCC TGCCTGTGTT GTAGTTCTGG TTTTCTTAAA
  AAGCAAACCC CGCGATATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	PWD/PhJ
ss46966167	NES10875759	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	PWD/PhJ
rs30616673					SNP	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966167	NES10875759	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129405475 () rs orientation: forward

Symbol	Name	Function Class
Elovl6	ELOVL fatty acid elongase 6	Intron
Rr585045	regulatory region 585045	898 bp proximal
Tssr31647	transcription start site region 31647	1031 bp upstream