rs30618640 SNP Detail

Summary

• ID
  rs30618640
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153513093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTCCTGT GTACAAAGCA
  CAGGAGCGGA AGTCAGGTGA TCTTATCGTT TCTGCCTTAC CATTCATCAG CAGTTGATCC
  ATGGCAGAGG CGTTGGTAGG TAATTCTGTC TATTCCCTTC ATCGATGGTT TAACTCAAAC
  CTCATGAGGG GCACATGAAA GCCAAGGAGT TTAAGTTGTT GTGGAGACAT TAACTTCACA
  S
  TAGGAATGAG CTCAGAAAGG TTAAGTAAGT TTCCCGAACT CACACAGCTT GTTTGGTGGT
  TTGAATAAGA ACGGCCCCCA TAGAATACTT GGCTCATAGA GAGTCGCACT TTTAGGAGGT
  GTAGCCTTGT TAGAGGAAGT GCACCACTGG GAAGGCGGGC TTTGAGGTCT GAGGTGCTAG
  ACCTAGTAGG TCAGTCTCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47466283	NES10336204	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30618640					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47466283	NES10336204	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153513093 () rs orientation: forward

Symbol	Name	Function Class
Rr587763	regulatory region 587763	129 bp distal
Rr587764	regulatory region 587764	887 bp distal
Rr587765	regulatory region 587765	33 bp proximal