rs30619721 SNP Detail

Summary

• ID
  rs30619721
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3028111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTGGACATTT CTAAATTTTC AACGTTTTTC AGTTTTACTC ACCATATTTC ACGTCCTAAA
  GTGTGTATTT CTCATTTTCC GTGATTTTCA GTTTTCTACC ATTAATCCAG GTAGTTCAGT
  GTGCAATTCT CATTTTTAAC GTTTTTCAGA GATTTCGTCA TTTTTCAAGT CATCAAGTGG
  ATGTTTCTCA TTTTCCATGA TTTTCAGTTT TCTTGCCACA TTCCACTTCC TACAGTGGAC
  ATTTCTAAAT TTTCCACATT TTTCAGTTTT CCTCGCCATA TTTCACGTCC TAAAGTGTGT
  W
  TTTCTCATTT CCCTGATTTT CAGTTTTCTC GCCATATTCC AAATCCTTCA GTGTGCATTT
  CTCATTTTTC ACGTTTTTCA GTTGTATCGT CATTTTTCAT GTCGTCAAGT AGATGTTTCT
  CATTTTCCAT GATTTTCAGT TTTCTCGCCA TATTCCAGGT CCTTCAGTGG GCATTTCTCA
  TTTTTCACGT TTTTCAGTGA TTTTGTCATT TTTTATGTCG TCAAGTGGAT ATTTCTCATT
  TTCCATGATT TTCAGATTTC TTTCCATATT CCATGTCCTT CAGTGTGCGA TTCTCATTTT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss46425925	mCV24721938	ABI	CRAMUS_MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30619721					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3028111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21324	CpG island 21324	931 bp distal
Cpgi21325	CpG island 21325	1276 bp proximal
Rr673606	regulatory region 673606	1581 bp distal
Rr673607	regulatory region 673607	1101 bp distal
Rr673608	regulatory region 673608	451 bp distal
Rr673609	regulatory region 673609	within coordinates
Rr673610	regulatory region 673610	770 bp proximal
Tssr83582	transcription start site region 83582	1616 bp downstream
Tssr83583	transcription start site region 83583	1429 bp downstream
Tssr83584	transcription start site region 83584	1342 bp downstream
Tssr83585	transcription start site region 83585	966 bp downstream
Tssr83586	transcription start site region 83586	643 bp downstream
Tssr83587	transcription start site region 83587	336 bp downstream
Tssr83588	transcription start site region 83588	1260 bp upstream
Tssr83589	transcription start site region 83589	1544 bp upstream
Tssr88019	transcription start site region 88019	1391 bp upstream
Tssr88020	transcription start site region 88020	1323 bp upstream
Tssr88021	transcription start site region 88021	699 bp upstream
Tssr88022	transcription start site region 88022	623 bp upstream
Tssr88023	transcription start site region 88023	1291 bp downstream