rs30619772 SNP Detail

Summary

• ID
  rs30619772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94903079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTGTTA AAGATAGAGA
  TGAAGAAAGC AGTTTGTGCT GAATCAGGAT GGGCTGAAAG GCTGAGCTGG AGGCCCCAGT
  CTACCCAAGG GGGCCTAAAA TAGGCCTTAG TGCACAGGCT CTCATCACTG GATTGGGACC
  ATCAGGAAAG AACGCAGGCT GGCCTGCTCT GTTTAAGAGA GGAGGTGTCA CCACTGTCTG
  Y
  AGAGAGCAGC CACTCTGATA GGAGAAGCAG CTACTATCCT GAGTCTCCAG TCTGAAGGGA
  GGGCACATGG CTCATCTGTC AGGGAGAGAT AAAACCCACA TAGGAAACCA GTAAAGAAAC
  GACAAGGTCT TCATTTCTCA GAATTGGAGT AGCTTTAGAC AAATAGGGGC GGCATCCTAG
  GACAGGGATC TGGAGAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46425827	mCV22694220	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss132651959	ENSMUSSNP3011485	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323817427	CHEV_11_94873567	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30619772					SNP	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94903079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	1592 bp distal
Gm72634	predicted gene, 72634	355 bp upstream
Rr250	regulatory region 250	69 bp proximal
Rr454926	regulatory region 454926	1512 bp distal
Rr454927	regulatory region 454927	366 bp distal
Rr454928	regulatory region 454928	within coordinates
Samd14	sterile alpha motif domain containing 14	within coordinates
Tssr104337	transcription start site region 104337	1977 bp downstream
Tssr104338	transcription start site region 104338	1960 bp downstream
Tssr104339	transcription start site region 104339	1888 bp downstream
Tssr104340	transcription start site region 104340	1874 bp downstream
Tssr104341	transcription start site region 104341	1834 bp downstream
Tssr104342	transcription start site region 104342	1770 bp downstream
Tssr110238	transcription start site region 110238	1928 bp upstream
Tssr110239	transcription start site region 110239	46 bp upstream