rs30619866 SNP Detail

Summary

• ID
  rs30619866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70705327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CCCTGATCCC CCCAGAGCCC AATTCCCGCA TGGGAGAACC GTCCATCCCT
  Y
  CTGTCACTGT CGTTGACCCA CTTGAGATGC CCTCCCACTC TCTGGAAAAG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39204173	mCV24332318	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss51530278	NES14627575	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	T	C	C	C	C
ss139684679	ENSMUSSNP7083858	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30619866					SNP	T	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51530278	NES14627575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70705327 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	602 bp distal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	327 bp distal
Tssr4470	transcription start site region 4470	1266 bp downstream
Tssr126423	transcription start site region 126423	1420 bp downstream
Tssr126424	transcription start site region 126424	1346 bp downstream
Tssr126425	transcription start site region 126425	1290 bp downstream
Tssr126426	transcription start site region 126426	1154 bp downstream
Tssr126427	transcription start site region 126427	1039 bp downstream
Tssr126428	transcription start site region 126428	1027 bp downstream
Tssr126429	transcription start site region 126429	268 bp downstream
Tssr126430	transcription start site region 126430	200 bp downstream
Tssr126431	transcription start site region 126431	42 bp downstream
Tssr126432	transcription start site region 126432	4 bp downstream