rs30620077 SNP Detail

Summary

• ID
  rs30620077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5539225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAC ATCTAGGGCA TCCCGCGACC
  R
  GGGGCGGAAG GAGTGCGTCT CCAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44947836	mCV24811226	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss146012150	ENSMUSSNP2743725	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss325717055	CHEV_19_5489197	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30620077					SNP	A	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5539225 () rs orientation: forward

Symbol	Name	Function Class
1700061A03Rik	RIKEN cDNA 1700061A03 gene	within coordinates
Cfl1	cofilin 1, non-muscle	1258 bp upstream
Cpgi10453	CpG island 10453	827 bp distal
Cpgi10454	CpG island 10454	within coordinates
Cpgi10455	CpG island 10455	1056 bp proximal
Gm59148	predicted gene, 59148	within coordinates
Mus81	MUS81 structure-specific endonuclease subunit	764 bp upstream
Rr363568	regulatory region 363568	within coordinates
Rr370432	regulatory region 370432	645 bp downstream
Rr405805	regulatory region 405805	within coordinates
Rr405806	regulatory region 405806	976 bp upstream
Tssr154437	transcription start site region 154437	121 bp upstream
Tssr154438	transcription start site region 154438	1278 bp upstream
Tssr154439	transcription start site region 154439	1315 bp upstream
Tssr154440	transcription start site region 154440	1360 bp upstream
Tssr157605	transcription start site region 157605	801 bp upstream
Tssr157606	transcription start site region 157606	247 bp upstream
Tssr157607	transcription start site region 157607	225 bp upstream
Tssr157608	transcription start site region 157608	139 bp upstream
Tssr157609	transcription start site region 157609	106 bp upstream