rs30620333 SNP Detail

Summary

• ID
  rs30620333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72886800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGATGCTA GGACACCTTA
  GCAACAGCAG GCGCAGCTGT TAACACTGGT ACCCAGTTCT GTACCTGGTG TGGAAGAGCT
  GACTCCTTCC TCCCTTAGCT GAACACCATC TGGTTTCTAA CAACTTAGAC AAGGTAGTAT
  ACCTTACCTT TTGCAGTCAC TGCTGGCTCT TTCCAACTTG TAGTATTGCC TAGGAGGGGG
  R
  CCCGTGGTGC CCTCTATACT GTATGGACTC CTCTGTACTG AGGGGTCCAT TGGGAACTAT
  GTGCCTTGAA TCGTATCTAT TAAGAACTAT CCCATTTGGG GACAGGGACT GCAAAATGTG
  TTGAAAAAAC CTCTATGCAC TCACCCAGAT TTTTTTTTGG TTTGTTTTTG GGACCAGATT
  TTGCTGGGTA ACCATGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44948109	mCV23053073	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30620333					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72886800 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	1438 bp upstream
Tssr7322	transcription start site region 7322	1467 bp upstream
Tssr7323	transcription start site region 7323	1510 bp upstream
Tssr7324	transcription start site region 7324	1559 bp upstream
Tssr7325	transcription start site region 7325	1574 bp upstream
Tssr7326	transcription start site region 7326	1604 bp upstream
Tssr7327	transcription start site region 7327	1633 bp upstream
Tssr7328	transcription start site region 7328	1936 bp upstream
Tssr7329	transcription start site region 7329	1971 bp upstream
Tssr7330	transcription start site region 7330	1985 bp upstream
Tssr12178	transcription start site region 12178	1474 bp downstream
Tssr12179	transcription start site region 12179	1517 bp downstream
Tssr12180	transcription start site region 12180	1581 bp downstream
Tssr12181	transcription start site region 12181	1602 bp downstream
Tssr12182	transcription start site region 12182	1645 bp downstream
Tssr12183	transcription start site region 12183	1666 bp downstream