rs30621083 SNP Detail

Summary

• ID
  rs30621083
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122700241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGT GATTACTGAA TGTAAACTCA
  R
  GTTACCTAAG TGTCCTCCGA GGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss39204092	mCV24754291	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss147013278	ENSMUSSNP5211634	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss324858487	CHEV_14_122862051	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30621083					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122700241 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6894	CpG island 6894	within coordinates
Gm56762	predicted gene, 56762	717 bp upstream
Tssr127333	transcription start site region 127333	1318 bp upstream
Tssr130332	transcription start site region 130332	1207 bp upstream
Tssr130333	transcription start site region 130333	1334 bp downstream
Tssr130334	transcription start site region 130334	1384 bp downstream
Tssr130335	transcription start site region 130335	1397 bp downstream
Tssr130336	transcription start site region 130336	1990 bp downstream
Zic5	zinc finger protein of the cerebellum 5	within coordinates