rs30622315 SNP Detail

Summary

• ID
  rs30622315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185043983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATGTCTG AGGCTGGCTT
  TGAACCTATG GATTCATGCA TGCCAAACAA GTGCTTCCCA CCGAGCTGTC TTCCTAGCTC
  TTTCTCCTTT GGATGTCATT AAGTTCCCGG ACACACAGCT AAACTGGACA TCTTATATGC
  ATAGCTCTGT ACAGAATTCA TTAGTGTTTT CCCTTCCGAT AAATACTTAC AAGTAGAATT
  Y
  TTTATAATGA AACTGAGGTC ATGCTTTCAA ATAGTGTAAA AGAATTTCTT AAGGTTTGTC
  CTTGCAAACT CAAGAATTCT CTTTATTTTA TTAACAATAT TCTATACTTC AGCACACAGT
  TGACTTATGA CCTAAAGACC AGTATAAATT ACTGTTGATA AAAGTGGGTG AAACCACTTA
  TCACTCTGTA GTCTGTTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46425577	mCV22896891	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss146427366	ENSMUSSNP1856205	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss320174679	CHEV_1_187135665	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30622315					SNP	T	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185043983 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	401 bp upstream
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir194-1	microRNA 194-1	1533 bp upstream
Mir215	microRNA 215	1795 bp upstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	1533 bp proximal
Rr425362	regulatory region 425362	1067 bp distal
Rr425363	regulatory region 425363	62 bp proximal
Tssr10600	transcription start site region 10600	399 bp upstream
Tssr10601	transcription start site region 10601	1884 bp upstream