rs30622604 SNP Detail

Summary

• ID
  rs30622604
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55681368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATTTTCC CTGTGTAAAA
  GATCAACAAG TTATAAAATT AAAATTTATA ACATAACATT AAGATCTCTA TAATAAGTTT
  TAAGGCCATT GATCATCTTC TCAGAATATG TACCCACAGC AGCTGCTGCT ACAAAGAATC
  CCAGGAAACT CAAGAACCCA CATATACTGA CCTTTGTAAT GTAGTCCACA AACTGTGGAC
  K
  ACACCAGCCA TTTTCACACC AACCTGGCTC TGAAATTATT TTTGCATTCC TAATCCTGGT
  CTCTGCATTT TTGAGGCCTA CCATTTCTTT TGCAGACTAA ATGAAATCAT ATACTTATTA
  CATATTGATC TCCACTCTAT TTCAGCTCCC TTCTTAAGCC ATATATCCCA CATAGGTCTC
  ATTAAGAACA TCATACCATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46966684	NES10828195	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30622604					SNP	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966684	NES10828195	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55681368 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9630024C22Rik	RIKEN cDNA 9630024C22 gene			1394 bp downstream
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr577001	regulatory region 577001			213 bp proximal
Rr577002	regulatory region 577002			1224 bp proximal