rs30622606 SNP Detail

Summary

• ID
  rs30622606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55682125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTC TACGTTAAGA CTGGGTTAGG
  R
  TGATCAATTA AATACATTTG AGGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45481398	mCV24853067	ABI	CRAMUS_MOUSE	f	SNP		A					G
ss46966686	NES10828199	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	G	A		G	A		G
ss135190253	ENSMUSSNP6333279	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G
ss320775796	CHEV_3_55578626	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30622606					SNP	A	A	G	A	A	A	G	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966686	NES10828199	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55682125 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9630024C22Rik	RIKEN cDNA 9630024C22 gene			637 bp downstream
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr577001	regulatory region 577001			96 bp distal
Rr577002	regulatory region 577002			467 bp proximal