rs30622609 SNP Detail

Summary

• ID
  rs30622609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55682861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGAAACT GCCTCAAGAA
  TAGAGGCAAT TAATTATTTC TGTATTTTTT CTTCTTCTGT CTTGAGGCAC AAAAGTTATC
  CATCCAGTTA AAACAGCAAA TGAAATAAAG AGATTATTTT TTTATTTAAA CACATATGGC
  TTTTGCCTGC AATACTGATC ACCACAAGGT CTACAGATGC CCGTGGCTAA ATTGTGTGCC
  R
  GCAGATGCAC ACAAGGGAAA ACGCGCTAAT GCAGCGTGGA GAGAAAAACA AATGAAGAAC
  TGCGCTGCCT ACTCGGAAAC CCAACCCAGA AACCAACCCA CACCCACCCT TCCCCAATGA
  ATTATGCATT CTGCTTATCA ACTACAGGTG AAGGTTACAA AACATTAACC TTGGTCTGTT
  GCAAAAAGTA TAAAATGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46966690	NES10828204	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30622609					SNP	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966690	NES10828204	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55682861 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9630024C22Rik	RIKEN cDNA 9630024C22 gene			within coordinates
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr577001	regulatory region 577001			832 bp distal
Rr577002	regulatory region 577002			within coordinates