rs30622764 SNP Detail

Summary

• ID
  rs30622764
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165955583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAGAAACC TTAGCCAGTC TCTAAATTTA GCCTCTGGCC
  CCATAGGATG GCAGCTCTCT GGGAGGAAGG AATGCAGGCT TCACTTAACC CTTTCCCTTC
  Y
  GGCTGATTCT CAGACATTGA TGTTTAGCAG TGGGTTTAGA ACAGGCTCAT GCTGTGACAC
  AAGGACCTAG AGAAAACCAT CTCCCGCAGG AGGCTGGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44947661	mCV23028199	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss146013165	ENSMUSSNP4959183	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30622764					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165955583 () rs orientation: forward

Symbol	Name	Function Class
Gm70591	predicted gene, 70591	1923 bp downstream
Rr372394	regulatory region 372394	848 bp downstream
Rr422534	regulatory region 422534	129 bp distal
Rr422535	regulatory region 422535	within coordinates
Rr422536	regulatory region 422536	595 bp proximal
Rr422537	regulatory region 422537	1734 bp proximal
Styxl2	serine/threonine/tyrosine interacting like 2	116 bp upstream
Tssr9858	transcription start site region 9858	1014 bp downstream
Tssr14809	transcription start site region 14809	1154 bp upstream
Tssr14810	transcription start site region 14810	793 bp upstream
Tssr14811	transcription start site region 14811	110 bp upstream
Tssr14812	transcription start site region 14812	94 bp upstream
Tssr14813	transcription start site region 14813	73 bp upstream