rs30623718 SNP Detail

Summary

• ID
  rs30623718
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050576 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TGATTTCGCC ATTTTTCAAG TCGTCAAGTG GATGTTTCTC ATTTTCCATG ATTTTCACTT
  TTCTTGTCAT ATTCCATGTC CTACAGTGGA CATTTCTGAA TTTTCCACTT TTTTCAGTTT
  TCCTCGCCAT ATTTCACGTC CTAAAGTGTG TATTTCTCAT TTTCCGTGAT TTTCAGTTTT
  CTCGCCATAT TCCAGGTCCT ACAGTGTGCA TTTCTCATTT TTCACGTTTT TCAGTGATTT
  CGTCATTTTT CAAGTCGTCA AGTGGATGTT TCTCATTTTC CATGATTTTC AGTTTTCTTG
  H
  CATATTCCAT GTCCTAGGTG GACATTTGTA AATTTTCCAC CTTTTTCTGT TTTTCTCGCC
  ATATTTTATG TCCTAAAGTC TATATTTCTC ATTTTCCGTG ATTTTCAGTT TTCTCGCCAT
  ATTCCAGGTC CTACAGTGTG CATTTCTCAT TTTCCACTTT TTTATCTTAT TTCGTCATTT
  TTCAAGTCGT CAAGTGGATG TTTCTCATTT TCCATGATTT TCAGTTTTCT TGCCATATTC
  CATGTCCTAC AGTGGACATT TCTAAATTTT GCACTTTTTT CAGTTTTCCA CGCCATATTT
                                                                   
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46427701	mCV25357660	ABI	CRAMUS_MOUSE	f	SNP		C	C	T
ss46439025	mCV25369980	ABI	CRAMUS_MOUSE	r	SNP	G		T
ss46456049	mCV25146585	ABI	CRAMUS_MOUSE	r	SNP		G			A
ss46461624	mCV22863925	ABI	CRAMUS_MOUSE	f	SNP				A	C
ss46464053	mCV25389156	ABI	CRAMUS_MOUSE	r	SNP		G	G	A
ss46467770	mCV22832918	ABI	CRAMUS_MOUSE	f	SNP			C		T
ss46468703	mCV25356081	ABI	CRAMUS_MOUSE	r	SNP		T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30623718					SNP	C	C	C	T	?

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050576 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1750 bp downstream
Tssr4285	transcription start site region 4285	1725 bp upstream
Tssr4286	transcription start site region 4286	1621 bp downstream
Tssr4287	transcription start site region 4287	1586 bp upstream
Tssr4288	transcription start site region 4288	1558 bp downstream
Tssr4289	transcription start site region 4289	1463 bp upstream
Tssr4290	transcription start site region 4290	1456 bp downstream
Tssr4291	transcription start site region 4291	1376 bp upstream
Tssr4292	transcription start site region 4292	1340 bp downstream
Tssr4293	transcription start site region 4293	1305 bp upstream
Tssr4294	transcription start site region 4294	1303 bp downstream
Tssr4295	transcription start site region 4295	1230 bp upstream
Tssr4296	transcription start site region 4296	1267 bp downstream
Tssr4297	transcription start site region 4297	1203 bp upstream
Tssr4298	transcription start site region 4298	1185 bp downstream
Tssr4299	transcription start site region 4299	1145 bp downstream
Tssr4300	transcription start site region 4300	1107 bp downstream
Tssr4301	transcription start site region 4301	1089 bp upstream
Tssr4302	transcription start site region 4302	1077 bp upstream
Tssr4303	transcription start site region 4303	1022 bp downstream
Tssr4304	transcription start site region 4304	993 bp upstream
Tssr4305	transcription start site region 4305	924 bp downstream
Tssr4306	transcription start site region 4306	905 bp upstream
Tssr4307	transcription start site region 4307	884 bp downstream
Tssr4308	transcription start site region 4308	852 bp upstream
Tssr4309	transcription start site region 4309	808 bp upstream
Tssr4310	transcription start site region 4310	761 bp downstream
Tssr4311	transcription start site region 4311	733 bp upstream
Tssr4312	transcription start site region 4312	653 bp downstream
Tssr4313	transcription start site region 4313	594 bp upstream
Tssr4314	transcription start site region 4314	582 bp downstream
Tssr4315	transcription start site region 4315	558 bp downstream
Tssr4316	transcription start site region 4316	531 bp upstream
Tssr4317	transcription start site region 4317	455 bp downstream
Tssr4318	transcription start site region 4318	431 bp upstream
Tssr4319	transcription start site region 4319	374 bp upstream
Tssr4320	transcription start site region 4320	310 bp downstream
Tssr4321	transcription start site region 4321	282 bp upstream
Tssr4322	transcription start site region 4322	183 bp downstream
Tssr4323	transcription start site region 4323	148 bp upstream
Tssr4324	transcription start site region 4324	118 bp downstream
Tssr4325	transcription start site region 4325	67 bp downstream
Tssr4326	transcription start site region 4326	29 bp upstream
Tssr4327	transcription start site region 4327	26 bp downstream
Tssr4328	transcription start site region 4328	within coordinates
Tssr4329	transcription start site region 4329	22 bp downstream
Tssr4330	transcription start site region 4330	157 bp upstream
Tssr4331	transcription start site region 4331	181 bp downstream
Tssr4332	transcription start site region 4332	287 bp downstream
Tssr4333	transcription start site region 4333	299 bp upstream
Tssr4334	transcription start site region 4334	321 bp downstream
Tssr4335	transcription start site region 4335	468 bp downstream
Tssr4336	transcription start site region 4336	472 bp upstream
Tssr4337	transcription start site region 4337	545 bp downstream