rs30623758 SNP Detail

Summary

• ID
  rs30623758
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3027942 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TGGAAAATGA GAAACATCTA CTTGACGACT TGAAAAATGA CGAAATCACT AAAAAAACGT
  GAAAAATGAG AAATGCACAC TGAAGGACCT GGAATATGGC AAGAAAACGG AAAATCACGG
  AAAATGAGAA ATACACACTT TAGGACGTGA AATATGGCGA GGAAAAGTGA AAAAGGTGGA
  AAATTTAGAA ATGTCCACTG TAGGATGTGG AATATGGCAA TAAAACTGAA AATCATGGAA
  AATGAGAAAC ATCCACTTGA CGACTTGAAA AATGACGAAA TCACTAAAAA ACGTGAAAAA
  W
  GAGAAATGCC CACTGAAGGA CCTGGAATAT GGCTAGAAAA CTGATAATCA CGGAAAATGA
  GAAATACACA CTTTAGGACG TGAAATATTG CAAGGAAAAT TGTAAAAGGT GGAAAATTTA
  GAAATGTCCA CTGTAGGACG TGGAATATGG CAAGAAAACT GAAAATCATG GAAAATGAGA
  AACATCCACT TGACGACTTG AAAAATGACG AAATCACTAA AAAACTTAAA AAATGAGAAA
  CGCACACTGA AGGACCAGGA ATATGGCGAG AAAACTGAAA ATCACGGAAA ATGAGAAATA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ
ss46427802	mCV22801870	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ
rs30623758					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3027942 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21324	CpG island 21324	762 bp distal
Cpgi21325	CpG island 21325	1445 bp proximal
Rr673606	regulatory region 673606	1412 bp distal
Rr673607	regulatory region 673607	932 bp distal
Rr673608	regulatory region 673608	282 bp distal
Rr673609	regulatory region 673609	within coordinates
Rr673610	regulatory region 673610	939 bp proximal
Tssr83582	transcription start site region 83582	1447 bp downstream
Tssr83583	transcription start site region 83583	1260 bp downstream
Tssr83584	transcription start site region 83584	1173 bp downstream
Tssr83585	transcription start site region 83585	797 bp downstream
Tssr83586	transcription start site region 83586	474 bp downstream
Tssr83587	transcription start site region 83587	167 bp downstream
Tssr83588	transcription start site region 83588	1429 bp upstream
Tssr83589	transcription start site region 83589	1713 bp upstream
Tssr88019	transcription start site region 88019	1222 bp upstream
Tssr88020	transcription start site region 88020	1154 bp upstream
Tssr88021	transcription start site region 88021	530 bp upstream
Tssr88022	transcription start site region 88022	454 bp upstream
Tssr88023	transcription start site region 88023	1460 bp downstream