rs30624062 SNP Detail

Summary

• ID
  rs30624062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119353759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAAAAAA AAATGGGTAA
  AACACATTTC TTAGTTTTAT ATTCTTAAAA ACTTTCCTGT TACTAATACT GCATAATACA
  CTGTTTTATT AACTTATGCA TTTCCTGTTC ATTTTATTCC TCCTTAATTC TAAACAACTG
  GGAATAATGT TGGAATTTAC AGAAGAAAAA AAAAATAGAG CCAGAAAGGA AAGGGGGGTT
  Y
  ATTTGCTCAT AGTTTTTAAT GCCTATTATA AGTGTAGTGT TTTTGGTTTT TTTGTTTGTT
  TGTTTGTTTT GTTTTTTTGA GTAAGGAAGT TTTGGAAAAT AAAGGAAGAA AACAGCCCTA
  CATGTCTGCA GCATCTCCAA GTGATAAGGA AAGCGCTGAT GTAGGAGGAA CTGAAGCTGT
  CTGGCCTTAC CTCTGCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46426673	mCV22975024	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss138908011	ENSMUSSNP6703452	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30624062					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119353759 () rs orientation: forward

Symbol	Name	Function Class
Macc1	metastasis associated in colon cancer 1	374 bp upstream
Rr474303	regulatory region 474303	124 bp proximal
Rr474304	regulatory region 474304	362 bp proximal
Tssr115574	transcription start site region 115574	608 bp upstream
Tssr115575	transcription start site region 115575	666 bp upstream