rs30624265 SNP Detail

Summary

• ID
  rs30624265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153338047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGGAGG TTCCTGCTCT
  CAGCTCGCTT CCCTGGCTTC TGCTTCTACA ACCAGTATCT TTTCCCATGC AGTATCTTTT
  CTGGGGAAAG AAGTACGAAA AGCAACGAAA TACAGCACAC CCCCTCTGAT CTTGTATGTC
  CGTAAGGGCA GCAGCCAATC GAAGCACACC CTCACTGATC CGGTCTGTCT GTAAGGGCGG
  Y
  GGCCAATCAC AGCTGATCAC CCCCACTGAC CTCTTACGTC TTCAAGGGTG GAAGCCAATC
  TCATTTCCCA GAGTTCAGAC TGAATGGGCA GCAAGTTCTG TCACCAAGAG GAAACAGCTG
  TATGTAAACA AATACCCAGA CACCAAATAC ATGAAGCTTT TCCAGCAAAG GACAGAACCA
  TTGTTTATGC TTTATGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47467825	NES10329439	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T	T	T	T	T	T	C	T
ss136110176	ENSMUSSNP5168246	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30624265					SNP	C	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467825	NES10329439	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153338047 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587712	regulatory region 587712			within coordinates
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32432	transcription start site region 32432			1481 bp downstream
Tssr36231	transcription start site region 36231			1285 bp upstream
Tssr36232	transcription start site region 36232			1055 bp downstream
Tssr36233	transcription start site region 36233			1107 bp downstream