rs30625087 SNP Detail

Summary

• ID
  rs30625087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153337620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAAAGCT TAGGGTTGAG
  TGGTTGGTTC ACAACTGGCA GTGCCCCGTG GAAGGATCTG GAAGTTTAGG ATACGAGACT
  TAGCTGGAGA ATATAGATCA TGCAGTGTAG TCAAAGCCCA CCCATGTCCA GAGCCCTCTC
  CCTCTGCAGG GACCCCATCC AACCCTTCTT TGCTGTCTCT CCTCATCTAA GAGTAAGACA
  Y
  GCTGCAGTAG CCTGTTGCAC ACCCCAGCTG CAGCCACACC TTCACACCCA GCCCACTTTC
  TGCACAGTCG GGCTTCCAGA CAGCATGGCT CACACCTGTG TTGTCCACAG ATGGTCTGGA
  GACGAGTCAA GAGTCAAGAA CAGGTTTGGA CTCCTTAACA CTCTGCAGGC AGTGACTGTG
  AATTCCACCC AATCTCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47467837	NES10329435	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	T	T	T	T	T	T	T	T
ss136110152	ENSMUSSNP3106740	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30625087					SNP	C	C	T	T	T	C	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467837	NES10329435	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153337620 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587712	regulatory region 587712			49 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32432	transcription start site region 32432			1054 bp downstream
Tssr36231	transcription start site region 36231			858 bp upstream
Tssr36232	transcription start site region 36232			1482 bp downstream
Tssr36233	transcription start site region 36233			1534 bp downstream