rs30626464 SNP Detail

Summary

• ID
  rs30626464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71962171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCTGATAC TTTAGCAAAT GCATTCTTTT
  GTGTTGAAAA CTGAGCATGG AGGGATGGAT AGTCAGGGGC ACCAGCAGGC TGACTGGAAG
  AGCTGGTTGT CAAAACAAAT ATCAGATGTT TATACTTCCC AAACGATGGA GCCATATATG
  Y
  TCTTGCCTAA AGCTAGTCTG CATATtctct ctctttctct ctctctctct ctctctccct
  ctctctctct ctctctctcc tctttccttc tttctcttcc tcttcctctt tttcctctca
  caccctctct atttccctcc ttctatctct                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47467554	NES11052223	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	T	T	C		T
ss144647948	ENSMUSSNP6606025	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			T
ss319787553	CHEV_1_71969586	CHEVERUD	SCREENING_POP	f	SNP								C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30626464					SNP	T	C	T	T	T	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467554	NES11052223	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71962171 () rs orientation: forward

Symbol	Name	Function Class
Gm70455	predicted gene, 70455	1562 bp downstream