rs30627155 SNP Detail

Summary

• ID
  rs30627155
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3036169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATTCCATGTC CTACAGTAGA CATTTCTAAA TTTTCAATAT TTTCAGTTAT CCTCGCCATA
  TTTCATGTCC TAAAGTGTGT ATTTATCATT TTCCGTGATT TCTAGTTTTC TCGGCATAAT
  CCAGGTCCTA CAGTGTGCAT TTCTCATTTT TCATGTTTTT CAGTGATTTC GTCATTTTTC
  AAGTCGTCAA GTGGATGTTT CTCATTTTCC GTGATTTTCA GTTTTCTCGC CATATTACAG
  GTCCTACAGT GAGCATTTCT CATTTCTCAC GTTTTTCAGT GATTTAGTCA TTTTCTATTC
  M
  TCATGTGGAT GTTTCTCATT TTCCATGATT TTCAGTTTTC TTGCCATATT CCACGTCCTA
  CAGTGGACAT TTCTAAATTT TCCACCTTTT TCAGTTTTCC TCGCCATATT TCACGTCCTA
  AAGTGTGTAT TTCTCATTTT CTGTGATTTT CAGTTTTCTA GCCATATTTC AGGTCCTACA
  GTGTGCATTT TTCTTTTTTC ACTTTTTTCA GTGTTTCGTC ATTTTTCAAG TCGTCAAATG
  GATATTTCTC ATTTTCCATG ATTTTTAGTT TTCTTGCCAT ATTCCATATC TTACAGTGGA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss46426964	mCV23575275	ABI	CRAMUS_MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs30627155					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3036169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	within coordinates
Cpgi21329	CpG island 21329	1839 bp proximal
Tssr83597	transcription start site region 83597	1960 bp downstream
Tssr83598	transcription start site region 83598	432 bp downstream
Tssr83599	transcription start site region 83599	266 bp downstream
Tssr83600	transcription start site region 83600	71 bp downstream
Tssr83601	transcription start site region 83601	146 bp upstream
Tssr83602	transcription start site region 83602	187 bp upstream
Tssr83603	transcription start site region 83603	229 bp upstream
Tssr83604	transcription start site region 83604	1161 bp upstream
Tssr83605	transcription start site region 83605	1844 bp upstream
Tssr88025	transcription start site region 88025	247 bp upstream
Tssr88026	transcription start site region 88026	41 bp upstream
Tssr88027	transcription start site region 88027	178 bp downstream
Tssr88028	transcription start site region 88028	217 bp downstream
Tssr88029	transcription start site region 88029	1875 bp downstream