rs30627316 SNP Detail

Summary

• ID
  rs30627316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71963611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acggctgcc tttttatctt gtatctttta
  tttcttcatc tttcatgttt ttctttttcc tcttctcttt tggCCCCTCC CCCTTTGACA
  TTATTCTTTT CCTAAATTCC AAATTCTCTT CTCGTCTCAT TTCAAACTTC TGCACTTCGC
  Y
  TTCTTACAAG TTTCTTTATA AACCTAAGTA TTTGCCTTTT CTTTCATACA CCAAAGCAAA
  TAAATACCTT TGTTGTGAAC TCTTTTTCAT TAGGATTTTG TCTATGGGAC ATATTTAAGA
  ATCTTTTTCA AAGCAAACTT TACTGAGTGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45104057	mCV25021257	ABI	CRAMUS_MOUSE	f	SNP		T			C
ss47467566	NES11052018	PERLEGEN	MM_PANEL2	f	SNP	C		C	C		C	C	C		T	C	C	T		C
ss144648046	ENSMUSSNP1845606	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss319787570	CHEV_1_71971026	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30627316					SNP	C	T	C	C	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467566	NES11052018	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71963611 () rs orientation: forward

Symbol	Name	Function Class
Gm70455	predicted gene, 70455	122 bp downstream
Gm70563	predicted gene, 70563	1303 bp upstream