rs30629828 SNP Detail

Summary

• ID
  rs30629828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:105665499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTTGACAT ATCCCGCTTT TCTCACAGGG CAGAAAGTTA
  AACATAAAGG CCTCCTTTTT ATAATGTGAA GATCTGACTC TGAAGTTGGG GCAGATCATC
  Y
  ACTTGTTAAA ACAAGACATG AACATTCTTG TTATTCCTTA AAGGAGGAGG GAATGGCGTG
  CACTCAGTTT GAACTTTGAA TGCACCAGGA TGGGAGGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39205155	mCV23443592	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss146765630	ENSMUSSNP1913534	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss324800255	CHEV_14_105827282	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30629828					SNP	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:105665499 () rs orientation: forward

Symbol	Name	Function Class
5430440P10Rik	RIKEN cDNA 5430440P10 gene	within coordinates
Rr497207	regulatory region 497207	828 bp distal
Rr497208	regulatory region 497208	498 bp distal
Rr497209	regulatory region 497209	515 bp distal
Rr497210	regulatory region 497210	within coordinates
Rr497211	regulatory region 497211	1727 bp proximal