rs30631574 SNP Detail

Summary

• ID
  rs30631574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98937548 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCTCC TGTATCTAAG CTGGCTTTGA
  R
  TGGTCTTGAG TTTCTCACTG CCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46428354	mCV22891922	ABI	CRAMUS_MOUSE	f	SNP	A		A	G	A
ss148463529	ENSMUSSNP2111328	ENSEMBL	ENSEMBL_Sanger	r	SNP		C			T
ss325079640	CHEV_15_98870098	CHEVERUD	SCREENING_POP	r	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30631574					SNP	A	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98937548 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi7689	CpG island 7689	439 bp proximal
Gm41399	predicted gene, 41399	1569 bp upstream
Gm62755	predicted gene, 62755	898 bp downstream
Rr509290	regulatory region 509290	367 bp proximal
Rr509291	regulatory region 509291	818 bp proximal
Rr509292	regulatory region 509292	1334 bp proximal
Tuba1c	tubulin, alpha 1C	1562 bp downstream