rs30635926 SNP Detail

Summary

• ID
  rs30635926
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3038079 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  ATGGCAAGGA GAACTGAAAA AGGTGGAAAA TTTGGAAATG TCCACTGTAG GACATGGAAT
  TTGGCAAGAA AACTGAAAAT CATGGAAAAT GAGAAACAAC CACTTGACGA CTTGAAAAAT
  GACGAAATTA CTGAAAAACG TGAAAAATGA GACATGCACA CTGTAAGACC TAGAATATGT
  CGAGAATACT GAAAATCACA GAAAATGAGA AATACACACT TTAGGACGTG AAATATGGCG
  AGGAAAACTG AAAAAGGTGG AAAATTTAGC AATGTCCACT GTAGGACATG GAATATGGCA
  R
  GAAAACTGAA AATCATGGAA AAAGAGAAAC ATCACTTGAC GACTTGAAAA ATGACGAAAT
  CACTGAAAAA CGTGAAAAAT GAGAAATGCA ACTGTAGGAT CTGGAATATG GCGAGAAAAC
  TAAAAATCAA AAAAATAAGA AATACACACT TTAGGACGTG AAATATGGCG AGGAAAACTG
  AAAAATTTGG AAAATTTAGA AATGTCCACT GTAGGACATG GAATATGGCA AGAAAACTGA
  AAAATCATTG AAAATGAGAA ACACCCACTT GTCGACTTGA AAAATGACGA AATCACTGAA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ
ss46429233	mCV25364761	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ
rs30635926					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3038079 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	1490 bp distal
Cpgi21329	CpG island 21329	within coordinates
Mir101c	microRNA 101c	590 bp downstream
Rr673616	regulatory region 673616	829 bp distal
Rr673617	regulatory region 673617	169 bp distal
Rr673618	regulatory region 673618	222 bp proximal
Tssr83600	transcription start site region 83600	1981 bp downstream
Tssr83601	transcription start site region 83601	1736 bp downstream
Tssr83602	transcription start site region 83602	1692 bp downstream
Tssr83603	transcription start site region 83603	1678 bp downstream
Tssr83604	transcription start site region 83604	724 bp downstream
Tssr83605	transcription start site region 83605	45 bp downstream
Tssr83606	transcription start site region 83606	103 bp upstream
Tssr88026	transcription start site region 88026	1951 bp upstream
Tssr88027	transcription start site region 88027	1706 bp upstream
Tssr88028	transcription start site region 88028	1682 bp upstream
Tssr88029	transcription start site region 88029	9 bp upstream
Tssr88030	transcription start site region 88030	104 bp downstream