rs30636981 SNP Detail

Summary

• ID
  rs30636981
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69557641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTAAAGGCT TGCGCCACCA TACCCAGCCA GTTTAAGTCT
  TAATGCAGCA AGTTTCACTC ATGTCTTGTG CCTAACACTG AGGCAAATTA CCAAATGTTA
  R
  TAATGTGGGT CATTTGGTAT TGCAGGAAGC AACATGGCAA ATTCAGTAAT CAACTAGTAT
  GGGGGCAGGT GATCCACACT AGCAGGTAGG AGGGAAGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46429636	mCV25183282	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss132359909	ENSMUSSNP1585064	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss323730983	CHEV_11_69480317	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30636981					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69557641 () rs orientation: forward

Symbol	Name	Function Class
Cd68	CD68 antigen	662 bp upstream
Eif4a1	eukaryotic translation initiation factor 4A1	121 bp downstream
Gm24029	predicted gene, 24029	1019 bp downstream
Gm73992	predicted gene, 73992	within coordinates
Rr450061	regulatory region 450061	172 bp distal
Tssr102512	transcription start site region 102512	1179 bp downstream
Tssr102513	transcription start site region 102513	1141 bp downstream
Tssr102514	transcription start site region 102514	1111 bp downstream
Tssr102515	transcription start site region 102515	973 bp downstream
Tssr102516	transcription start site region 102516	322 bp downstream
Tssr102517	transcription start site region 102517	300 bp downstream
Tssr108752	transcription start site region 108752	1885 bp upstream
Tssr108753	transcription start site region 108753	1695 bp upstream
Tssr108754	transcription start site region 108754	1495 bp upstream
Tssr108755	transcription start site region 108755	1450 bp upstream
Tssr108756	transcription start site region 108756	1420 bp upstream
Tssr108757	transcription start site region 108757	1229 bp upstream
Tssr108758	transcription start site region 108758	990 bp upstream
Tssr108759	transcription start site region 108759	972 bp upstream
Tssr108760	transcription start site region 108760	910 bp upstream
Tssr108761	transcription start site region 108761	739 bp upstream
Tssr108762	transcription start site region 108762	666 bp upstream
Tssr108763	transcription start site region 108763	646 bp upstream
Tssr108764	transcription start site region 108764	410 bp downstream
Tssr108765	transcription start site region 108765	555 bp downstream