rs30636990 SNP Detail

Summary

• ID
  rs30636990
• Variation Type
  SNP
• Alleles
  A/C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050510 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TTTTCAGTTT TCTCGCTATA TTCCAGGTCA TACAGTGTGC ATTTCTCATT TTTCACGTTT
  TTCAGTGATT TCGTCTTTTT TCAAGTCCTC AAGTGGATGT TTCTCATTTT CCATGATTTT
  CTGTTTTCTT GCCATGTTCC CATGTCCTTC TGTGGACATT TCTAAATTTA CCACCTTTTT
  TACTTTTCCT CGCCTCATTT CACGTCCTAA AGTTTGTACT TCTCATTTTC CGTGATTTTC
  AGTTTTCTCG CCATATTCCA GGTCCTACAG TGTGCATTTC TCATTTTTCA CGTTTTTCAG
  N
  GATTTCGTCA TTTTTCAAGT CGTCAAGTGG ATGTTTCTCA TTTTCCATGA TTTTCAGTTT
  TCTTGCCATA TTCCTCCTCC TGTGGTGGAC ATTTCTAAAT TTTCCACCTT TTTCAGTTTT
  ACTCCCCATA TTTCATGTTC TAAAGTGTGT ATTTCTCATT TTCTGTGATT TTCAGTTTTC
  TCGCCATATT CCAGGTCCTA CAGTGTGTAT TTCTCATTTT TCACGTTTTT CAGTGATTTC
  GTCATTTTTC AAGTCGTCAA GTGGATGTTT CTCATTTTCC ATGATTTTCA GTTTTCTTGC
                                                                   
  
  N = A/C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46429346	mCV22801835	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss46440054	mCV22833235	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss46468977	mCV22814942	ABI	CRAMUS_MOUSE	r	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30636990					SNP	?	?	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050510 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1816 bp downstream
Tssr4285	transcription start site region 4285	1791 bp upstream
Tssr4286	transcription start site region 4286	1687 bp downstream
Tssr4287	transcription start site region 4287	1652 bp upstream
Tssr4288	transcription start site region 4288	1624 bp downstream
Tssr4289	transcription start site region 4289	1529 bp upstream
Tssr4290	transcription start site region 4290	1522 bp downstream
Tssr4291	transcription start site region 4291	1442 bp upstream
Tssr4292	transcription start site region 4292	1406 bp downstream
Tssr4293	transcription start site region 4293	1371 bp upstream
Tssr4294	transcription start site region 4294	1369 bp downstream
Tssr4295	transcription start site region 4295	1296 bp upstream
Tssr4296	transcription start site region 4296	1333 bp downstream
Tssr4297	transcription start site region 4297	1269 bp upstream
Tssr4298	transcription start site region 4298	1251 bp downstream
Tssr4299	transcription start site region 4299	1211 bp downstream
Tssr4300	transcription start site region 4300	1173 bp downstream
Tssr4301	transcription start site region 4301	1155 bp upstream
Tssr4302	transcription start site region 4302	1143 bp upstream
Tssr4303	transcription start site region 4303	1088 bp downstream
Tssr4304	transcription start site region 4304	1059 bp upstream
Tssr4305	transcription start site region 4305	990 bp downstream
Tssr4306	transcription start site region 4306	971 bp upstream
Tssr4307	transcription start site region 4307	950 bp downstream
Tssr4308	transcription start site region 4308	918 bp upstream
Tssr4309	transcription start site region 4309	874 bp upstream
Tssr4310	transcription start site region 4310	827 bp downstream
Tssr4311	transcription start site region 4311	799 bp upstream
Tssr4312	transcription start site region 4312	719 bp downstream
Tssr4313	transcription start site region 4313	660 bp upstream
Tssr4314	transcription start site region 4314	648 bp downstream
Tssr4315	transcription start site region 4315	624 bp downstream
Tssr4316	transcription start site region 4316	597 bp upstream
Tssr4317	transcription start site region 4317	521 bp downstream
Tssr4318	transcription start site region 4318	497 bp upstream
Tssr4319	transcription start site region 4319	440 bp upstream
Tssr4320	transcription start site region 4320	376 bp downstream
Tssr4321	transcription start site region 4321	348 bp upstream
Tssr4322	transcription start site region 4322	249 bp downstream
Tssr4323	transcription start site region 4323	214 bp upstream
Tssr4324	transcription start site region 4324	184 bp downstream
Tssr4325	transcription start site region 4325	133 bp downstream
Tssr4326	transcription start site region 4326	95 bp upstream
Tssr4327	transcription start site region 4327	92 bp downstream
Tssr4328	transcription start site region 4328	10 bp downstream
Tssr4329	transcription start site region 4329	12 bp upstream
Tssr4330	transcription start site region 4330	91 bp upstream
Tssr4331	transcription start site region 4331	115 bp downstream
Tssr4332	transcription start site region 4332	221 bp downstream
Tssr4333	transcription start site region 4333	233 bp upstream
Tssr4334	transcription start site region 4334	255 bp downstream
Tssr4335	transcription start site region 4335	402 bp downstream
Tssr4336	transcription start site region 4336	406 bp upstream
Tssr4337	transcription start site region 4337	479 bp downstream