rs30636997 SNP Detail

Summary

• ID
  rs30636997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26836195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT TGTATTCATT CAGCAAATAG
  Y
  TTTATTTCGA TTCATATGTT TATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39205953	mCV22747329	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss139210879	ENSMUSSNP2277386	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss324569418	CHEV_14_27927424	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30636997					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26836195 () rs orientation: forward

Symbol	Name	Function Class
Arhgef3	Rho guanine nucleotide exchange factor 3	661 bp upstream
Cpgi6253	CpG island 6253	287 bp proximal
Rr287890	regulatory region 287890	1595 bp distal
Rr287891	regulatory region 287891	195 bp distal
Rr296929	regulatory region 296929	5 bp proximal
Tssr124726	transcription start site region 124726	609 bp upstream
Tssr124727	transcription start site region 124727	657 bp upstream
Tssr124728	transcription start site region 124728	920 bp upstream