rs30637639 SNP Detail

Summary

• ID
  rs30637639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61294249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACTCGGTT TCCTTGCACC
  CTGCTTTGTT TTTTCTTCCT GCTGGAGGTC TGGCACCCCA GGAACTCCTT CCGCCGTCCT
  GCCGCTTTAA TTCACCGCTA CTTTCCTAGC GCCTTTGATG TGGTGGGAGG CTTCCTGTGT
  TTAACTGTGA GAGTTCGGGT GTCAGCAGCC CACAGCCCTG CACTGTGAAT TCCACAAGCA
  Y
  TTCTGAGATT TTAGGGAAGG CTTTACGTGA GACCGGGCAT GGCAAACGTG GGAGGGCTGC
  ACTTCTTCCT TTGGGACAGG TAAGGTTCCA CACAGCATCT TGGGAAGGCA GGGTGTGTGA
  TGGGGATTAC CGGTCCATAG TTCAGATAAT TGCTGGCCCG TCTCTCTGCC CCGAACGCAA
  AAGGTTTTCC CCTTGTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39205865	mCV24378451	ABI	CRAMUS_MOUSE	f	SNP		C					T
ss51520202	NES14630184	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	T		C	T	T	T		C		T	T	T		C
ss139609638	ENSMUSSNP2760800	ENSEMBL	ENSEMBL_Sanger	f	SNP		C												C
ss324650914	CHEV_14_61675637	CHEVERUD	SCREENING_POP	f	SNP												C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30637639					SNP	T	C	C	C	T	T	T	C	T	T	T	C	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51520202	NES14630184	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61294249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6575	CpG island 6575	35 bp distal
Rr369842	regulatory region 369842	within coordinates