rs30637801 SNP Detail

Summary

• ID
  rs30637801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51623107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACAGCTG TGGATCACCA
  GCTGTGGTCC AGGGAGCTCT ACTCTTCTCT GTCCTCAGGA AGAATATGAG TGCTCTTGAC
  TGCTGAGCCA TCTCTCCAGC CACAGCTAGG TGTATTTCTG AAAGTTGGTG GTACTGACAT
  TTCAATGATT GTCAGCCTCG GAGATATGCA ACCAAAGGCT TTGGTCACAC TCTAAAAGAT
  R
  CGCATTCCTC TAAAGATGTT TCCTTTGTCT AGAGTTGTTT ATATACACAG GGCAAGATGA
  ATGAAAGCAA ACAAGATATG AAGCATATCT AGAGCCCACA CACCCATAAT CAAATTAGAA
  CATGCGGCTT ATCTGTCTGA CAGTGAGGAG CATACTGACC CTACACATCC CTAGGCTACC
  CCTTAGTGCA CTGATGCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44948187	mCV23216000	ABI	CRAMUS_MOUSE	f	SNP	G	A					A
ss47349863	NES11071132	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	G	A	A	A	G	G	A	G	G
ss149111619	ENSMUSSNP1065654	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30637801					SNP	G	A	A	A	A	G	A	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47349863	NES11071132	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51623107 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Gm70189	predicted gene, 70189	1440 bp upstream
Rr366895	regulatory region 366895	983 bp upstream
Tssr6632	transcription start site region 6632	1404 bp upstream
Tssr6633	transcription start site region 6633	1465 bp upstream
Tssr11575	transcription start site region 11575	1023 bp downstream
Tssr11576	transcription start site region 11576	1314 bp downstream