rs30638813 SNP Detail

Summary

• ID
  rs30638813
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11172908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGGGTTATA CCACTGAAGA AAGTGACACC TCTCTCCTCA GCCACTATTA ACTGTTAATA
  GTCCCTCAGG GTAGGGGTGA AGCCTCCAGA GCCCTTCCTC CCTCTAATGA AAAAGTTGAT
  GACTCTAGTG TTGGGTAGGT GACCACATCT GTAGTGAGTT CATGAGTGCA TCACCCATGT
  TACATTCAGA GGACAATGTT GCACAGCCCT TTCTACCACT TCTGACTTTA AATCTTCCTA
  CCCTCTCTTC TATAACGTTC ATGGAGCCTT GGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  Y
  GTGTGTGTGC GCGCGTCCCA GAAAAATGAT TTAAAACATC TAAAACGTTT TTACTTTAAA
  ATAATTGTGT ATCTGCATGT GTGTTTGGAT GCCTATGAAA AAGGGTGTCA GGTCCCCTGA
  AGTTTAAGTT GGCACCGAGC TGCCTGATAA GAGTGTTAGC AATTAAACTC TGGTTCTCTG
  CAAAAACAGC AAGATTCATG ACCACTGAAC CAGCTCACCA ACCTCAAAAA AGATTTTTTA
  AAATAAAATG AAGAGAATGA CATCTTCAGA GGACACACCA ATTTCTTCAT GAACTGCTTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44948402	mCV25122743	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30638813					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11172908 () rs orientation: forward

Symbol	Name	Function Class
4930526L06Rik	RIKEN cDNA 4930526L06 gene	1273 bp upstream
Ms4a13	membrane-spanning 4-domains, subfamily A, member 13	within coordinates
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr158299	transcription start site region 158299	1140 bp downstream
Tssr158300	transcription start site region 158300	1156 bp downstream