rs30639300 SNP Detail

Summary

• ID
  rs30639300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52248219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTA AAAACTGCAA ATCCCATTTA
  R
  GTTTCACCCC GTTTCAAACC TTGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39206377	mCV24785378	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss324626577	CHEV_14_52630437	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30639300					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52248219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6435	CpG island 6435	1100 bp distal
D14Mit183	DNA segment, Chr 14, Massachusetts Institute of Technology 183	393 bp distal
Rr369820	regulatory region 369820	1915 bp downstream
Rr369821	regulatory region 369821	1631 bp downstream
Rr491851	regulatory region 491851	1906 bp distal
Rr491852	regulatory region 491852	1749 bp distal
Rr491853	regulatory region 491853	1697 bp distal
Rr491854	regulatory region 491854	1638 bp distal
Tssr128468	transcription start site region 128468	1869 bp upstream
Tssr128469	transcription start site region 128469	1776 bp upstream
Tssr128470	transcription start site region 128470	1558 bp upstream
Tssr128471	transcription start site region 128471	1127 bp upstream
Tssr128472	transcription start site region 128472	1099 bp upstream
Tssr128473	transcription start site region 128473	86 bp downstream
Tssr128474	transcription start site region 128474	106 bp downstream
Zfp219	zinc finger protein 219	within coordinates