rs30642722 SNP Detail

Summary

• ID
  rs30642722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167758513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGACACTGA GACCTATTAC CCACATAGGC TTATTGGAAG
  GAATATCAAT TCAGTGTGAG GAGGAGTGAG TTCAGGTGTA CTGACTGTGG TGGTTTGAAT
  R
  TGCTTGGCCC ACAAGGAGTG GAACTGTTAG GAGGTGTGGC TTTGATGGAG AAAGTTTGTC
  ATTGTAGGGG TGGGGTTTGA GACCCTCCTC CTAGCTACC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss44948341	mCV24467543	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss146052738	ENSMUSSNP172599	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30642722					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167758513 () rs orientation: forward

Symbol	Name	Function Class
Cpgi987	CpG island 987	849 bp distal
D1Mit16	DNA segment, Chr 1, Massachusetts Institute of Technology 16	1591 bp distal
Rr422779	regulatory region 422779	369 bp distal
Rr422780	regulatory region 422780	1199 bp proximal
Rr422781	regulatory region 422781	1322 bp proximal