rs30642839 SNP Detail

Summary

• ID
  rs30642839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30332850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGT GATGCAGTTT CTTATTCTTC
  Y
  CTAAATATAA AAGTATTTTA ATGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss39206312	mCV23919234	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss139231669	ENSMUSSNP6478509	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss324576618	CHEV_14_31424079	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs30642839					SNP	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30332850 () rs orientation: forward

Symbol	Name	Function Class
Gm62449	predicted gene, 62449	1346 bp downstream
Prkcd	protein kinase C, delta	within coordinates
Rr288069	regulatory region 288069	951 bp proximal
Rr292185	regulatory region 292185	1250 bp distal
Tssr127876	transcription start site region 127876	1716 bp upstream