rs30644803 SNP Detail

Summary

• ID
  rs30644803
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54414095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA GAAACAAAGG AACGGAAAGA
  R
  AGGTTGCCGA GGCAGCAGTG CGTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39207229	mCV23057140	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss139557229	ENSMUSSNP3270083	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss324635249	CHEV_14_54796313	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30644803					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54414095 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492148	regulatory region 492148	within coordinates
Tcra	T cell receptor alpha chain	within coordinates
Traj40	T cell receptor alpha joining 40	1283 bp upstream
Traj41	T cell receptor alpha joining 41	313 bp downstream
Traj42	T cell receptor alpha joining 42	802 bp downstream
Traj43	T cell receptor alpha joining 43	1840 bp downstream
Tssr125564	transcription start site region 125564	1759 bp downstream
Tssr125565	transcription start site region 125565	1670 bp downstream
Tssr125566	transcription start site region 125566	656 bp downstream
Tssr125567	transcription start site region 125567	419 bp downstream
Tssr125568	transcription start site region 125568	402 bp downstream
Tssr125569	transcription start site region 125569	382 bp downstream
Tssr125570	transcription start site region 125570	353 bp downstream
Tssr128543	transcription start site region 128543	19 bp downstream