rs30645154 SNP Detail

Summary

• ID
  rs30645154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5650550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAAAGGT ACAGCTAAGA
  GCTATTATTC GGGCTATTGA TTAGTGGTTC AGGCTGGGAA AGCCCACTGG AACGTATGAG
  ATGGCTTGAC AATGGGTGTA AGGAGGTACA ATATGTGCAG TGTGAGCTGG TGGGGCATGT
  GCAGTGAGCT GGTGGGGCAT GTGCAATGAG CTGGTGGGGC ATGTGCAGTG TGAGCTGGTG
  R
  GACATGTGCA GTGAGCTGGT GGGACATGTG CAGCGTGAGC TGGTGGGGCA TGTGCAGTGA
  GCTGGTGGGG CATATGCAGT GAGCTGGTAG GACATGTGCA GTGTGAGCTG GTAGGACATG
  TGCAGTGAGC TGGTGGGGCA TGTGCAGTGA GCTGGTGGGG CATGTGCAGT GAGCTGGTGG
  GGCATGTGCA GTGTGAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss44949489	mCV25320804	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30645154					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5650550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10461	CpG island 10461	1171 bp proximal
Rnaseh2c	ribonuclease H2, subunit C	1351 bp upstream
Rr363585	regulatory region 363585	1050 bp proximal
Rr370434	regulatory region 370434	1254 bp upstream
Tssr154457	transcription start site region 154457	1319 bp upstream
Tssr154458	transcription start site region 154458	1332 bp upstream