rs30645364 SNP Detail

Summary

• ID
  rs30645364
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32733484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGAGATGC GTCAATCCCC CCCACCCCCG CCCCGCGCCT
  CCCCCTAGGG CCCGGCCTCT TCTCCCACGG TTGGGAACGC GCGGTGTGGG CAGATCCAGA
  R
  CAGGAGTCTC GTGTCCCGGC CTTCTGGCTA GCTCTATGGG TTACAAGCGA AAGGGAGGAA
  CAGCTTGGGG ACTCTCCGCG TCAGCGTGCA CAAACCGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44949289	mCV23043366	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30645364					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32733484 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10762	CpG island 10762	within coordinates
Gm36566	predicted gene, 36566	within coordinates
Gm56634	predicted gene, 56634	within coordinates
Gm56643	predicted gene, 56643	465 bp downstream
Gm58496	predicted gene, 58496	1469 bp upstream
Gm58497	predicted gene, 58497	1620 bp upstream
Pten	phosphatase and tensin homolog	1493 bp upstream
Rr370485	regulatory region 370485	1450 bp downstream
Rr370486	regulatory region 370486	292 bp upstream
Rr405924	regulatory region 405924	284 bp downstream
Rr546562	regulatory region 546562	within coordinates
Rr546563	regulatory region 546563	2 bp proximal
Rr546564	regulatory region 546564	955 bp proximal
Rr546565	regulatory region 546565	1319 bp proximal
Tssr5485	transcription start site region 5485	1400 bp upstream
Tssr5486	transcription start site region 5486	1596 bp upstream
Tssr5487	transcription start site region 5487	1642 bp upstream
Tssr155991	transcription start site region 155991	1163 bp downstream
Tssr155992	transcription start site region 155992	1492 bp upstream
Tssr155993	transcription start site region 155993	1520 bp upstream
Tssr155994	transcription start site region 155994	1563 bp upstream
Tssr158898	transcription start site region 158898	325 bp downstream
Tssr158899	transcription start site region 158899	1238 bp downstream
Tssr158900	transcription start site region 158900	1285 bp downstream