rs30645423 SNP Detail

Summary

• ID
  rs30645423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51622813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATTAGTT TTATTCTAAA
  ATTCAGAAAT GGTCTGAGTT TAATGATATT TATTAATATG AATTATTATT TCCTATTGGT
  TTTCCCCTGC AGAAGAGTAA AGTAATTTTG TTCTTTCAAA CTTTTTGGTC TAGTGACACA
  CTGTCAGAGA ACAACACAGA TTTATTTAGT AATTGAAATT TTTAAAGTTT TTAAAATTAT
  R
  TGTACGTGTA TGTGTGTATA TCTGTGTGCC ACATATATGC AGGTGCCTGA AGAGACCAGA
  AAAGGACATT AGAGACCCAT GAAGCTGGAG ATTCAGACAG CTGTGGATCA CCAGCTGTGG
  TCCAGGGAGC TCTACTCTTC TCTGTCCTCA GGAAGAATAT GAGTGCTCTT GACTGCTGAG
  CCATCTCTCC AGCCACAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss44948571	mCV23216019	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss149111599	ENSMUSSNP1401110	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30645423					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51622813 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Gm70189	predicted gene, 70189	1734 bp upstream
Rr366895	regulatory region 366895	1277 bp upstream
Rr410721	regulatory region 410721	210 bp proximal
Rr410722	regulatory region 410722	1244 bp proximal
Rr410723	regulatory region 410723	1745 bp proximal
Tssr6632	transcription start site region 6632	1698 bp upstream
Tssr6633	transcription start site region 6633	1759 bp upstream
Tssr11575	transcription start site region 11575	1317 bp downstream
Tssr11576	transcription start site region 11576	1608 bp downstream